CIRCA: Circadian gene expression profiles.

Enter a search
(Examples 1451371_at 1422470_at gnf1m00037_a_at or Arntl or kinase inhibitor )

Query syntax mode: by gene symbol simple advanced

Choose probability filter
Probabily cut-off value ("0.5" or "2e-10")
JTK phase range ("0-6" or "10.30-11.10")

Output mode normal slim
Number of entries to download ("50" or "100", max: "1000")

Select one or more experiments to view

(If nothing is selected, CIRCA will search all experiments.)

			Experiment Mouse 1.OST Kidney (Affymetrix) UCSC RNAseq RNAseq_NM_011170 Probeset 10476314 Links Wikipedia HomoloGene Symbol Prnp Unigene Mm.648 RefSeq Protein None RefSeq DNA NM_011170 Description prion protein
	p-Value	q-Value	period	phase
JTK	9.4304e-10	1.5967e-06	24.0	15.0
Lomb Scargle	0.000845	0.331718	23.064	15.9
DeLichtenberg	0.3836	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Kidney (Affymetrix) UCSC RNAseq RNAseq_NM_011196 Probeset 10497079 Links Wikipedia HomoloGene Symbol Ptger3 Unigene Mm.30424 RefSeq Protein None RefSeq DNA NM_011196 Description prostaglandin E receptor 3 (subtype EP3)
	p-Value	q-Value	period	phase
JTK	9.4304e-10	1.5967e-06	24.0	20.0
Lomb Scargle	0.000714	0.331718	24.783	21.04
DeLichtenberg	0.9777	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Adrenal Gland (Affymetrix) UCSC RNAseq Probeset 10556487 Links None Symbol None Unigene None RefSeq Protein None RefSeq DNA Description
	p-Value	q-Value	period	phase
JTK	3.6911e-10	1.64051e-06	24.0	21.0
Lomb Scargle	0.000456	1.0	23.892	21.56
DeLichtenberg	0.0011	0.0249436	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_144828 Probeset 1451331_at Links Wikipedia HomoloGene Symbol Ppp1r1b Unigene Mm.45372 RefSeq Protein NP_659077 RefSeq DNA NM_144828 Description protein phosphatase 1, regulatory (inhibitor) subunit 1B
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	24.5	19.25
Lomb Scargle	5.67e-06	0.000664215	24.383	1.81
DeLichtenberg	0.0309	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_010480 Probeset 1437497_a_at Links Wikipedia HomoloGene Symbol Hsp90aa1 Unigene Mm.1843 RefSeq Protein NP_034610 RefSeq DNA NM_010480 Description heat shock protein 90, alpha (cytosolic), class A member 1
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	22.0	20.5
Lomb Scargle	6.48e-06	0.000721616	23.525	1.29
DeLichtenberg	0.0115	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_146153 Probeset 1460545_at Links Wikipedia HomoloGene Symbol Thrap3 Unigene Mm.236211 RefSeq Protein NP_666265 RefSeq DNA NM_146153 Description thyroid hormone receptor associated protein 3
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	24.0	5.25
Lomb Scargle	7.76e-06	0.000806414	24.383	11.96
DeLichtenberg	0.0291	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_201529 Probeset 1455056_at Links Wikipedia HomoloGene Symbol Lmo7 Unigene Mm.479274 RefSeq Protein NP_963287 RefSeq DNA NM_201529 Description LIM domain only 7
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	25.0	11.5
Lomb Scargle	7.71e-06	0.000803069	24.836	18.26
DeLichtenberg	0.0878	0.696792	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001163729 RNAseq_NM_027910 Probeset 1415991_a_at Links Wikipedia HomoloGene Symbol Klhdc3 Unigene Mm.254784 RefSeq Protein NP_001157201 NP_082186 RefSeq DNA NM_001163729 NM_027910 Description kelch domain containing 3
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	23.0	8.0
Lomb Scargle	4.63e-06	0.000588219	22.345	15.55
DeLichtenberg	0.7893	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001034851 RNAseq_NM_025459 Probeset 1424683_at Links Wikipedia HomoloGene Symbol Fam134b Unigene Mm.25311 RefSeq Protein NP_001030023 NP_079735 RefSeq DNA NM_001034851 NM_025459 Description family with sequence similarity 134, member B
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	25.0	7.0
Lomb Scargle	1.62e-05	0.00125972	24.383	14.24
DeLichtenberg	0.0346	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001166408 RNAseq_NM_030690 Probeset 1417400_at Links Wikipedia HomoloGene Symbol Rai14 Unigene Mm.212395 RefSeq Protein NP_001159880 NP_109615 RefSeq DNA NM_001166408 NM_030690 Description retinoic acid induced 14
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	23.0	2.0
Lomb Scargle	1.56e-05	0.00122574	23.525	6.58
DeLichtenberg	0.0505	0.587162	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_078479 Probeset 1422451_at Links Wikipedia HomoloGene Symbol Mrps21 Unigene Mm.24108 RefSeq Protein NP_510964 RefSeq DNA NM_078479 Description mitochondrial ribosomal protein S21
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	23.0	16.5
Lomb Scargle	2.32e-05	0.00155474	23.525	23.74
DeLichtenberg	0.5691	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_025460 Probeset 1451000_at Links Wikipedia HomoloGene Symbol Tmem126a Unigene Mm.28963 RefSeq Protein NP_079736 RefSeq DNA NM_025460 Description transmembrane protein 126A
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	25.0	16.0
Lomb Scargle	5.45e-05	0.00276263	24.836	0.02
DeLichtenberg	0.6251	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001024918 RNAseq_NM_027689 Probeset 1436931_at Links Wikipedia HomoloGene Symbol Rfx4 Unigene Mm.79070 RefSeq Protein NP_001020089 NP_081965 RefSeq DNA NM_001024918 NM_027689 Description regulatory factor X, 4 (influences HLA class II expression)
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	24.0	3.0
Lomb Scargle	0.000117	0.00459253	23.525	10.74
DeLichtenberg	0.0001	0.0437874	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_016737 Probeset 1415909_at Links Wikipedia HomoloGene Symbol Stip1 Unigene Mm.258633 RefSeq Protein NP_058017 RefSeq DNA NM_016737 Description stress-induced phosphoprotein 1
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	26.0	19.5
Lomb Scargle	4.34e-05	0.00235262	25.794	0.53
DeLichtenberg	0.0265	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001039175 RNAseq_NM_001039176 RNAseq_NM_019422 Probeset 1456530_x_at Links Wikipedia HomoloGene Symbol Elovl1 Unigene Mm.282096 RefSeq Protein NP_001034264 NP_001034265 NP_062295 RefSeq DNA NM_001039175 NM_001039176 NM_019422 Description elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	27.0	18.5
Lomb Scargle	5.73e-05	0.00282745	25.794	4.45
DeLichtenberg	0.0719	0.647641	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_025423 Probeset 1416841_at Links Wikipedia HomoloGene Symbol 1110059E24Rik Unigene Mm.272430 RefSeq Protein NP_079699 RefSeq DNA NM_025423 Description RIKEN cDNA 1110059E24 gene
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	25.0	13.0
Lomb Scargle	0.000135	0.00506542	25.306	19.17
DeLichtenberg	0.113	0.779481	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001080934 Probeset 1434473_at Links Wikipedia HomoloGene Symbol Slc16a5 Unigene Mm.25773 RefSeq Protein NP_001074403 RefSeq DNA NM_001080934 Description solute carrier family 16 (monocarboxylic acid transporters), member 5
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	22.0	18.0
Lomb Scargle	0.000436	0.0114459	22.725	23.46
DeLichtenberg	0.0305	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_007502 Probeset 1423126_at Links Wikipedia HomoloGene Symbol Atp1b3 Unigene Mm.424 RefSeq Protein NP_031528 RefSeq DNA NM_007502 Description ATPase, Na+/K+ transporting, beta 3 polypeptide
	p-Value	q-Value	period	phase
JTK	2.47e-08	1.66e-06	29.0	21.0
Lomb Scargle	1.77e-05	0.00131948	27.951	3.35
DeLichtenberg	0.5858	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST White Adipose (Affymetrix) UCSC RNAseq RNAseq_NM_008719 Probeset 10345675 Links Wikipedia HomoloGene Symbol Npas2 Unigene Mm.2380 RefSeq Protein None RefSeq DNA NM_008719 Description neuronal PAS domain protein 2
	p-Value	q-Value	period	phase
JTK	2.48458e-10	1.76683e-06	24.0	0.0
Lomb Scargle	0.00146	1.0	23.064	22.84
DeLichtenberg	0.2574	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001166177 RNAseq_NM_028710 Probeset 1427002_s_at Links Wikipedia HomoloGene Symbol Arsg Unigene Mm.211850 RefSeq Protein NP_001159649 NP_082986 RefSeq DNA NM_001166177 NM_028710 Description arylsulfatase G
	p-Value	q-Value	period	phase
JTK	2.69e-08	1.8e-06	24.0	1.5
Lomb Scargle	9.15e-05	0.00388948	23.525	7.59
DeLichtenberg	0.0116	0.568452	24.0	NA
back to the top