CIRCA: Circadian gene expression profiles.

Enter a search
(Examples 1451371_at 1422470_at gnf1m00037_a_at or Arntl or kinase inhibitor )

Query syntax mode: by gene symbol simple advanced

Choose probability filter
Probabily cut-off value ("0.5" or "2e-10")
JTK phase range ("0-6" or "10.30-11.10")

Output mode normal slim
Number of entries to download ("50" or "100", max: "1000")

Select one or more experiments to view

(If nothing is selected, CIRCA will search all experiments.)

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001025093 RNAseq_NM_009715 Probeset 1452116_s_at Links Wikipedia HomoloGene Symbol Atf2 Unigene Mm.209903 RefSeq Protein NP_001020264 NP_033845 RefSeq DNA NM_001025093 NM_009715 Description activating transcription factor 2
	p-Value	q-Value	period	phase
JTK	2.43e-09	2.24e-07	23.0	5.5
Lomb Scargle	2.27e-05	0.00154651	22.725	12.52
DeLichtenberg	0.8711	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_008180 Probeset 1441931_x_at Links Wikipedia HomoloGene Symbol Gss Unigene Mm.252316 RefSeq Protein NP_032206 RefSeq DNA NM_008180 Description glutathione synthetase
	p-Value	q-Value	period	phase
JTK	2.43e-09	2.24e-07	25.0	9.0
Lomb Scargle	5.26e-05	0.00268665	24.836	16.29
DeLichtenberg	0.1461	0.889776	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001005868 RNAseq_NM_021563 Probeset 1428011_a_at Links Wikipedia HomoloGene Symbol Erbb2ip Unigene Mm.277354 RefSeq Protein NP_001005868 NP_067538 RefSeq DNA NM_001005868 NM_021563 Description Erbb2 interacting protein
	p-Value	q-Value	period	phase
JTK	2.43e-09	2.24e-07	27.0	7.5
Lomb Scargle	1.41e-05	0.00115413	26.302	13.63
DeLichtenberg	0.2776	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_001037940 RNAseq_NM_001037941 RNAseq_NM_001127367 RNAseq_NM_011847 Probeset 1429776_a_at Links Wikipedia HomoloGene Symbol Dnajb6 Unigene Mm.290110 RefSeq Protein NP_001033029 NP_001033030 NP_001120839 NP_035977 RefSeq DNA NM_001037940 NM_001037941 NM_001127367 NM_011847 Description DnaJ (Hsp40) homolog, subfamily B, member 6
	p-Value	q-Value	period	phase
JTK	2.43e-09	2.24e-07	24.0	15.0
Lomb Scargle	8.65e-05	0.00376567	23.946	0.07
DeLichtenberg	0.0373	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_008140 Probeset 1460212_at Links Wikipedia HomoloGene Symbol Gnat1 Unigene Mm.284853 RefSeq Protein NP_032166 RefSeq DNA NM_008140 Description guanine nucleotide binding protein, alpha transducing 1
	p-Value	q-Value	period	phase
JTK	2.43e-09	2.24e-07	23.0	10.0
Lomb Scargle	6.21e-05	0.00299869	22.725	17.28
DeLichtenberg	0.0221	0.568452	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_176952 Probeset 1456096_at Links Wikipedia HomoloGene Symbol 6430573F11Rik Unigene Mm.180924 RefSeq Protein NP_795926 RefSeq DNA NM_176952 Description RIKEN cDNA 6430573F11 gene
	p-Value	q-Value	period	phase
JTK	2.43e-09	2.24e-07	25.0	1.5
Lomb Scargle	0.00147	0.0270716	24.836	9.09
DeLichtenberg	0.0109	0.568452	24.0	NA
back to the top

			Experiment Mouse 1.OST Liver (Affymetrix) UCSC RNAseq RNAseq_NM_021534 Probeset 10488797 Links Wikipedia HomoloGene Symbol Pxmp4 Unigene Mm.24673 RefSeq Protein None RefSeq DNA NM_021534 Description peroxisomal membrane protein 4
	p-Value	q-Value	period	phase
JTK	5.92042e-11	2.33896e-07	24.0	23.0
Lomb Scargle	0.000405	0.173327	23.892	22.19
DeLichtenberg	0.8185	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Liver (Affymetrix) UCSC RNAseq RNAseq_NM_033074 Probeset 10427772 Links Wikipedia HomoloGene Symbol Tars Unigene Mm.286061 RefSeq Protein None RefSeq DNA NM_033074 Description threonyl-tRNA synthetase
	p-Value	q-Value	period	phase
JTK	5.92042e-11	2.33896e-07	24.0	23.0
Lomb Scargle	0.000396	0.173327	23.064	22.13
DeLichtenberg	0.0678	0.689423	24.0	NA
back to the top

			Experiment Mouse 1.OST Liver (Affymetrix) UCSC RNAseq RNAseq_NM_007715 Probeset 10530733 Links Wikipedia HomoloGene Symbol Clock Unigene Mm.3552 RefSeq Protein None RefSeq DNA NM_007715 Description circadian locomotor output cycles kaput
	p-Value	q-Value	period	phase
JTK	5.92042e-11	2.33896e-07	24.0	23.0
Lomb Scargle	0.000467	0.173327	23.064	22.15
DeLichtenberg	0.1578	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Liver (Affymetrix) UCSC RNAseq RNAseq_NM_172442 Probeset 10466304 Links Wikipedia HomoloGene Symbol Dtx4 Unigene Mm.247695 RefSeq Protein None RefSeq DNA NM_172442 Description deltex 4 homolog (Drosophila)
	p-Value	q-Value	period	phase
JTK	5.92042e-11	2.33896e-07	24.0	23.5
Lomb Scargle	0.000354	0.173327	23.064	22.17
DeLichtenberg	0.5439	1.0	24.0	NA
back to the top

			Experiment Mouse 1.OST Heart (Affymetrix) UCSC RNAseq RNAseq_NM_029090 Probeset 10433219 Links Wikipedia HomoloGene Symbol Nat15 Unigene Mm.479546 RefSeq Protein None RefSeq DNA NM_029090 Description N-acetyltransferase 15 (GCN5-related, putative)
	p-Value	q-Value	period	phase
JTK	2.77038e-11	2.46259e-07	26.0	17.0
Lomb Scargle	0.000823	0.630717	24.783	16.17
DeLichtenberg	0.0435	0.525862	24.0	NA
back to the top

			Experiment Mouse Pituitary 48 hour Hughes 2009 (Affymetrix) Probeset 1433969_at Links Wikipedia HomoloGene Symbol Cdkl4 Unigene Mm.329216 RefSeq Protein NP_001028615 RefSeq DNA NM_001033443 Description cyclin-dependent kinase-like 4
	p-Value	q-Value	period	phase
JTK	1.35e-10	2.54e-07	24.0	1.0
Lomb Scargle	7.27e-06	0.0117424	22.725	6.29
DeLichtenberg	0.0133	0.160687	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_175478 Probeset 1456767_at Links Wikipedia HomoloGene Symbol Lrfn3 Unigene Mm.23157 RefSeq Protein NP_780687 RefSeq DNA NM_175478 Description leucine rich repeat and fibronectin type III domain containing 3
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	25.0	22.5
Lomb Scargle	2.45e-06	0.000414397	24.836	6.0
DeLichtenberg	0.0001	0.0437874	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_013614 Probeset 1427364_a_at Links Wikipedia HomoloGene Symbol Odc1 Unigene Mm.34102 RefSeq Protein NP_038642 RefSeq DNA NM_013614 Description ornithine decarboxylase, structural 1
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	24.0	19.0
Lomb Scargle	5.48e-06	0.000657323	23.946	0.79
DeLichtenberg	0.1266	0.82979	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_019980 Probeset 1416303_at Links Wikipedia HomoloGene Symbol Litaf Unigene Mm.294753 RefSeq Protein NP_064364 RefSeq DNA NM_019980 Description LPS-induced TN factor
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	26.5	21.875
Lomb Scargle	1.41e-06	0.000299964	26.302	5.97
DeLichtenberg	0.0616	0.615059	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_007510 Probeset 1449712_s_at Links Wikipedia HomoloGene Symbol Atp6v1e1 Unigene Mm.29045 RefSeq Protein NP_031536 RefSeq DNA NM_007510 Description ATPase, H+ transporting, lysosomal V1 subunit E1
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	26.0	11.5
Lomb Scargle	7.35e-06	0.000774515	25.306	17.7
DeLichtenberg	0.5475	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_028421 RNAseq_NM_028864 Probeset 1436183_at Links Wikipedia HomoloGene Symbol Zc3hav1 Unigene Mm.25243 RefSeq Protein NP_082697 NP_083140 RefSeq DNA NM_028421 NM_028864 Description zinc finger CCCH type, antiviral 1
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	24.0	4.5
Lomb Scargle	1.98e-05	0.00141521	23.525	12.12
DeLichtenberg	0.0419	0.578713	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_009370 Probeset 1420895_at Links Wikipedia HomoloGene Symbol Tgfbr1 Unigene Mm.197552 RefSeq Protein NP_033396 RefSeq DNA NM_009370 Description transforming growth factor, beta receptor I
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	26.0	9.25
Lomb Scargle	1.36e-05	0.0011296	25.306	17.03
DeLichtenberg	0.5559	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_024221 Probeset 1416090_at Links Wikipedia HomoloGene Symbol Pdhb Unigene Mm.301527 RefSeq Protein NP_077183 RefSeq DNA NM_024221 Description pyruvate dehydrogenase (lipoamide) beta
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	24.0	14.0
Lomb Scargle	2.65e-05	0.00169927	23.525	21.93
DeLichtenberg	0.8429	1.0	24.0	NA
back to the top

			Experiment Mouse Liver 48 hour Hughes 2009 (Affymetrix) UCSC RNAseq RNAseq_NM_023721 Probeset 1438993_a_at Links Wikipedia HomoloGene Symbol Atp6v1d Unigene Mm.479544 RefSeq Protein NP_076210 RefSeq DNA NM_023721 Description ATPase, H+ transporting, lysosomal V1 subunit D
	p-Value	q-Value	period	phase
JTK	2.89e-09	2.6e-07	25.0	15.0
Lomb Scargle	6.86e-05	0.00321614	24.836	23.21
DeLichtenberg	0.0917	0.70988	24.0	NA
back to the top